- Predicted Gene MLOC_55887
MLOC_55887 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 11.2688 | 11.203 | 11.3115 | 12.9759 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 9.80153 | 1.26798 | 1.93293 | 3.58498 |
| INF1 | Young developing inflorescences (5mm) | 33.8862 | 37.9341 | 31.6016 | 35.8104 |
| INF2 | Developing inflorescences (1-1.5 cm) | 37.1387 | 38.8232 | 28.9848 | 49.2027 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 7.34444 | 8.60189 | 9.79605 | 12.4583 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 10.4248 | 6.07809 | 6.86723 | 19.3049 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 16.9149 | 20.5067 | 17.4864 | 23.7015 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 0.766406 | 0.405971 | 1.2322 | 2.08318 |
CDS Structure of MLOC_55887
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55887.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os01g55280.1 |
+3 |
2e-94 |
298 |
189/252 (75%) |
13101.m05816 protein expressed protein |
| TAIR PP10 |
AT1G17140.2 |
+3 |
2e-20 |
94 |
106/403 (26%) |
| Symbols: ICR1, RIP1 | interactor of constitutive active rops 1 | chr1:5856740-5857861 REVERSE LENGTH=344 |
