MLOC_55872 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.203885.450184.041223.85101
LEAShoots from the seedlings (10 cm shoot stage)6.751286.65158.993935.9249
INF1Young developing inflorescences (5mm)3.675973.35033.58922.65833
INF2Developing inflorescences (1-1.5 cm)6.265155.885965.888356.06906
ROORoots from the seedlings (10 cm shoot stage)4.014885.587883.572445.65927
NODDeveloping tillers at six leaf stage, 3rd internode1.935022.77943.020999.0077
CAR5Developing grain, bracts removed (5 DPA)7.123476.307027.217385.92962
CAR15Developing grain, bracts removed (15 DPA)8.476398.606688.3799116.9763



CDS Structure of MLOC_55872






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55872.12
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55872.12CUST_13442_PI427708080AvailableAvailablecontig_40350 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g30770.1 +1 0.0 1342 683/949 (72%) 13108.m03185 protein ABC transporter, ATP-binding protein, putative, expressed
TAIR PP10 AT3G47780.1 +1 0.0 1029 531/941 (56%) | Symbols: ATATH6, ATH6 | ABC2 homolog 6 | chr3:17624500-17628972 FORWARD LENGTH=935