MLOC_55868 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.0655483000.104995
LEAShoots from the seedlings (10 cm shoot stage)0.10154100.04613160.0738479
INF1Young developing inflorescences (5mm)1.20821.28031.883251.29632
INF2Developing inflorescences (1-1.5 cm)5.531464.714524.942575.89235
ROORoots from the seedlings (10 cm shoot stage)0.1151690.062190.1844990.119388
NODDeveloping tillers at six leaf stage, 3rd internode0.04818870.1530.1000840.521411
CAR5Developing grain, bracts removed (5 DPA)4.284384.209654.692474.61253
CAR15Developing grain, bracts removed (15 DPA)0.5912580.6584870.4546171.4814



CDS Structure of MLOC_55868






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55868.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375230NoneNoneNoneNone
MLOC_55868.3CUST_3505_PI427708080AvailableAvailablecontig_40345 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g10640.1 -1 0.0 606 301/378 (80%) 13102.m01186 protein 26S protease regulatory subunit, putative, expressed
TAIR PP10 AT5G43010.1 -1 0.0 595 294/378 (78%) | Symbols: RPT4A | regulatory particle triple-A ATPase 4A | chr5:17248563-17251014 REVERSE LENGTH=399