- Predicted Gene MLOC_55862
MLOC_55862 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_55862_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_55862_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 10.7201 | 20.4628 | 18.1372 | 16.7356 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 23.6796 | 24.2109 | 24.7509 | 20.3194 |
INF1 | Young developing inflorescences (5mm) | 19.3542 | 19.9147 | 18.8631 | 15.3563 |
INF2 | Developing inflorescences (1-1.5 cm) | 23.2207 | 24.5859 | 21.8254 | 24.6782 |
ROO | Roots from the seedlings (10 cm shoot stage) | 9.76041 | 18.7991 | 12.503 | 19.7895 |
NOD | Developing tillers at six leaf stage, 3rd internode | 18.3299 | 23.6436 | 21.8565 | 77.4052 |
CAR5 | Developing grain, bracts removed (5 DPA) | 23.291 | 21.599 | 24.2642 | 21.0609 |
CAR15 | Developing grain, bracts removed (15 DPA) | 12.9881 | 11.9991 | 12.4158 | 26.3556 |
CDS Structure of MLOC_55862
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55862.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os12g01190.1 |
-2 |
0.0 |
1417 |
799/1186 (67%) |
13112.m00023 protein RNA recognition motif containing protein, putative, expressed |
TAIR PP10 |
AT5G60170.2 |
-2 |
3e-155 |
500 |
391/1162 (34%) |
RNA binding (RRM/RBD/RNP motifs) family protein | chr5:24228178-24232394 FORWARD LENGTH=987 |