MLOC_55862 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.720120.462818.137216.7356
LEAShoots from the seedlings (10 cm shoot stage)23.679624.210924.750920.3194
INF1Young developing inflorescences (5mm)19.354219.914718.863115.3563
INF2Developing inflorescences (1-1.5 cm)23.220724.585921.825424.6782
ROORoots from the seedlings (10 cm shoot stage)9.7604118.799112.50319.7895
NODDeveloping tillers at six leaf stage, 3rd internode18.329923.643621.856577.4052
CAR5Developing grain, bracts removed (5 DPA)23.29121.59924.264221.0609
CAR15Developing grain, bracts removed (15 DPA)12.988111.999112.415826.3556



CDS Structure of MLOC_55862






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55862.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366467NoneNoneNoneNone
MLOC_55862.2CUST_3503_PI427708080AvailableAvailablecontig_40341 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g01190.1 -2 0.0 1417 799/1186 (67%) 13112.m00023 protein RNA recognition motif containing protein, putative, expressed
TAIR PP10 AT5G60170.2 -2 3e-155 500 391/1162 (34%) RNA binding (RRM/RBD/RNP motifs) family protein | chr5:24228178-24232394 FORWARD LENGTH=987