- Predicted Gene MLOC_55853
MLOC_55853 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 2.43603 | 1.83341 | 2.42258 | 2.26247 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 4.03389 | 0.585459 | 2.18018 | 1.85767 |
INF1 | Young developing inflorescences (5mm) | 3.85089 | 3.53962 | 3.25798 | 3.2887 |
INF2 | Developing inflorescences (1-1.5 cm) | 2.28492 | 3.03781 | 2.54614 | 3.2321 |
ROO | Roots from the seedlings (10 cm shoot stage) | 2.12321 | 1.41854 | 2.02155 | 1.86952 |
NOD | Developing tillers at six leaf stage, 3rd internode | 1.64572 | 2.22777 | 1.35951 | 5.86621 |
CAR5 | Developing grain, bracts removed (5 DPA) | 7.61692 | 6.91528 | 7.20501 | 7.74596 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.494857 | 0.364919 | 0.503496 | 1.17244 |
CDS Structure of MLOC_55853
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55853.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os08g29200.1 |
+3 |
0.0 |
950 |
483/603 (80%) |
13108.m03016 protein BURP domain containing protein, expressed |
TAIR PP10 |
AT1G70370.2 |
+3 |
0.0 |
583 |
307/604 (51%) |
| Symbols: PG2 | polygalacturonase 2 | chr1:26513003-26514998 REVERSE LENGTH=626 |