MLOC_55853 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.436031.833412.422582.26247
LEAShoots from the seedlings (10 cm shoot stage)4.033890.5854592.180181.85767
INF1Young developing inflorescences (5mm)3.850893.539623.257983.2887
INF2Developing inflorescences (1-1.5 cm)2.284923.037812.546143.2321
ROORoots from the seedlings (10 cm shoot stage)2.123211.418542.021551.86952
NODDeveloping tillers at six leaf stage, 3rd internode1.645722.227771.359515.86621
CAR5Developing grain, bracts removed (5 DPA)7.616926.915287.205017.74596
CAR15Developing grain, bracts removed (15 DPA)0.4948570.3649190.5034961.17244



CDS Structure of MLOC_55853






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55853.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK361141NoneNoneNoneNone
MLOC_55853.1CUST_3501_PI427708080AvailableAvailablecontig_40328 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g29200.1 +3 0.0 950 483/603 (80%) 13108.m03016 protein BURP domain containing protein, expressed
TAIR PP10 AT1G70370.2 +3 0.0 583 307/604 (51%) | Symbols: PG2 | polygalacturonase 2 | chr1:26513003-26514998 REVERSE LENGTH=626