MLOC_55849 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.939412.150711.865712.9711
LEAShoots from the seedlings (10 cm shoot stage)16.951811.769412.215412.1064
INF1Young developing inflorescences (5mm)5.209623.980334.163524.07508
INF2Developing inflorescences (1-1.5 cm)5.779415.671616.131756.79139
ROORoots from the seedlings (10 cm shoot stage)4.359543.378694.932094.67643
NODDeveloping tillers at six leaf stage, 3rd internode3.210114.619724.7806314.58
CAR5Developing grain, bracts removed (5 DPA)6.469146.325336.291856.68113
CAR15Developing grain, bracts removed (15 DPA)2.820783.111153.416527.69385



CDS Structure of MLOC_55849






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55849.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374960NoneNoneNoneNone
MLOC_55849.1CUST_3500_PI427708080AvailableAvailablecontig_40320 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g33500.1 +1 0.0 1119 566/672 (84%) 13102.m03632 protein threonyl-tRNA synthetase, putative, expressed
TAIR PP10 AT2G04842.1 +1 0.0 1040 481/583 (83%) | Symbols: EMB2761 | threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative | chr2:1698466-1701271 REVERSE LENGTH=650