MLOC_55848 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1515.471195.711190.31410.64
LEAShoots from the seedlings (10 cm shoot stage)534.931250.438322.757322.955
INF1Young developing inflorescences (5mm)724.982714.84694.121648.965
INF2Developing inflorescences (1-1.5 cm)452.481517.597472.273561.893
ROORoots from the seedlings (10 cm shoot stage)1020.17993.503754.8511230.97
NODDeveloping tillers at six leaf stage, 3rd internode429.568342.377187.8141024.66
CAR5Developing grain, bracts removed (5 DPA)746.085727.612692.186753.422
CAR15Developing grain, bracts removed (15 DPA)110.621105.894111.846268.697



CDS Structure of MLOC_55848






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55848.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55848.1CUST_13439_PI427708080AvailableAvailablecontig_40320 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g48720.2 +1 0.0 684 352/383 (92%) 13102.m05513 protein mitochondrial carrier protein, putative, expressed
TAIR PP10 AT3G08580.2 +1 0.0 575 307/385 (80%) | Symbols: AAC1 | ADP/ATP carrier 1 | chr3:2605706-2607030 REVERSE LENGTH=381