MLOC_55846 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.6717513.959111.77411.4027
LEAShoots from the seedlings (10 cm shoot stage)8.473174.582594.763994.8841
INF1Young developing inflorescences (5mm)35.957740.949346.839432.1492
INF2Developing inflorescences (1-1.5 cm)44.464745.674745.048648.359
ROORoots from the seedlings (10 cm shoot stage)5.3544110.07377.9341710.2577
NODDeveloping tillers at six leaf stage, 3rd internode4.876826.605138.7003522.5602
CAR5Developing grain, bracts removed (5 DPA)14.389115.998615.128814.5069
CAR15Developing grain, bracts removed (15 DPA)9.582758.93948.6798120.7589



CDS Structure of MLOC_55846






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55846.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373277NoneNoneNoneNone
MLOC_55846.2CUST_3498_PI427708080AvailableAvailablecontig_40319 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g08680.2 +1 4e-156 466 278/486 (57%) 13101.m00911 protein myb/SANT domain protein, putative, expressed
TAIR PP10 AT2G36960.2 +1 3e-49 185 138/406 (34%) | Symbols: TKI1 | TSL-kinase interacting protein 1 | chr2:15523552-15527245 FORWARD LENGTH=741