MLOC_5583 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.07838320.2997310.3920140.230142
LEAShoots from the seedlings (10 cm shoot stage)0.5942240.1088660.128320.245227
INF1Young developing inflorescences (5mm)0.4347730.4152180.3490170.306359
INF2Developing inflorescences (1-1.5 cm)0.8725960.5751860.5794210.676749
ROORoots from the seedlings (10 cm shoot stage)0.02268740.2680720.08102030.222546
NODDeveloping tillers at six leaf stage, 3rd internode0.207160.3011360.2846470.88569
CAR5Developing grain, bracts removed (5 DPA)0.4074520.5222540.5730210.430522
CAR15Developing grain, bracts removed (15 DPA)0.1602130.09065720.126870.273137



CDS Structure of MLOC_5583






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5583.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5583.3CUST_13435_PI427708080AvailableAvailablecontig_136407 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g53496.1 +3 0.0 1290 754/1443 (52%) 13104.m05508 protein NBS-LRR disease resistance protein, putative
TAIR PP10 AT3G14470.1 +3 4e-72 264 218/783 (28%) NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054