- Predicted Gene MLOC_55823
MLOC_55823 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_55823_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_55823_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 31.9273 | 23.6663 | 27.8505 | 31.0086 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 26.3378 | 24.3438 | 27.6666 | 24.4839 |
INF1 | Young developing inflorescences (5mm) | 46.6474 | 41.69 | 47.5872 | 42.8541 |
INF2 | Developing inflorescences (1-1.5 cm) | 38.1271 | 44.8077 | 46.0343 | 54.2929 |
ROO | Roots from the seedlings (10 cm shoot stage) | 24.0986 | 23.4627 | 22.7799 | 34.0138 |
NOD | Developing tillers at six leaf stage, 3rd internode | 7.61214 | 6.97846 | 10.9287 | 28.6534 |
CAR5 | Developing grain, bracts removed (5 DPA) | 31.9263 | 31.374 | 31.9427 | 36.8852 |
CAR15 | Developing grain, bracts removed (15 DPA) | 9.88127 | 10.3248 | 8.75818 | 26.3671 |
CDS Structure of MLOC_55823
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55823.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os04g58640.1 |
+3 |
2e-138 |
395 |
188/194 (97%) |
13104.m06164 protein cleavage and polyadenylation specificity factor subunit 5, putative, expressed |
TAIR PP10 |
AT4G25550.1 |
+3 |
8e-122 |
352 |
164/193 (85%) |
Cleavage/polyadenylation specificity factor, 25kDa subunit | chr4:13048519-13050873 FORWARD LENGTH=200 |