MLOC_55823 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains31.927323.666327.850531.0086
LEAShoots from the seedlings (10 cm shoot stage)26.337824.343827.666624.4839
INF1Young developing inflorescences (5mm)46.647441.6947.587242.8541
INF2Developing inflorescences (1-1.5 cm)38.127144.807746.034354.2929
ROORoots from the seedlings (10 cm shoot stage)24.098623.462722.779934.0138
NODDeveloping tillers at six leaf stage, 3rd internode7.612146.9784610.928728.6534
CAR5Developing grain, bracts removed (5 DPA)31.926331.37431.942736.8852
CAR15Developing grain, bracts removed (15 DPA)9.8812710.32488.7581826.3671



CDS Structure of MLOC_55823






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55823.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249484.1NoneNoneNoneNone
MLOC_55823.2CUST_3494_PI427708080AvailableAvailablecontig_40295 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g58640.1 +3 2e-138 395 188/194 (97%) 13104.m06164 protein cleavage and polyadenylation specificity factor subunit 5, putative, expressed
TAIR PP10 AT4G25550.1 +3 8e-122 352 164/193 (85%) Cleavage/polyadenylation specificity factor, 25kDa subunit | chr4:13048519-13050873 FORWARD LENGTH=200