MLOC_55820 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.789024.770945.20514.84042
LEAShoots from the seedlings (10 cm shoot stage)14.97813.150395.122116.35639
INF1Young developing inflorescences (5mm)4.2582.8652.387052.665
INF2Developing inflorescences (1-1.5 cm)0.3971650.4198250.3914420.41203
ROORoots from the seedlings (10 cm shoot stage)2.57392.866653.88112.89747
NODDeveloping tillers at six leaf stage, 3rd internode11.6610.04489.1085625.0831
CAR5Developing grain, bracts removed (5 DPA)0.8790481.016040.8834980.845734
CAR15Developing grain, bracts removed (15 DPA)0.5739540.3022170.5341011.08406



CDS Structure of MLOC_55820






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55820.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355280NoneNoneNoneNone
MLOC_55820.3CUST_3492_PI427708080AvailableAvailablecontig_40291 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g09340.1 -2 0.0 686 427/580 (74%) 13106.m01000 protein pectinesterase, putative, expressed
TAIR PP10 AT2G26440.1 -2 6e-124 403 245/559 (44%) Plant invertase/pectin methylesterase inhibitor superfamily | chr2:11247407-11249407 FORWARD LENGTH=547