- Predicted Gene MLOC_55820
MLOC_55820 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 5.78902 | 4.77094 | 5.2051 | 4.84042 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 14.9781 | 3.15039 | 5.12211 | 6.35639 |
| INF1 | Young developing inflorescences (5mm) | 4.258 | 2.865 | 2.38705 | 2.665 |
| INF2 | Developing inflorescences (1-1.5 cm) | 0.397165 | 0.419825 | 0.391442 | 0.41203 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 2.5739 | 2.86665 | 3.8811 | 2.89747 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 11.66 | 10.0448 | 9.10856 | 25.0831 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 0.879048 | 1.01604 | 0.883498 | 0.845734 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 0.573954 | 0.302217 | 0.534101 | 1.08406 |
CDS Structure of MLOC_55820
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55820.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os06g09340.1 |
-2 |
0.0 |
686 |
427/580 (74%) |
13106.m01000 protein pectinesterase, putative, expressed |
| TAIR PP10 |
AT2G26440.1 |
-2 |
6e-124 |
403 |
245/559 (44%) |
Plant invertase/pectin methylesterase inhibitor superfamily | chr2:11247407-11249407 FORWARD LENGTH=547 |