- Predicted Gene MLOC_55819
MLOC_55819 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 117.323 | 80.8559 | 90.8434 | 104.369 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 7.56551 | 22.8619 | 8.96274 | 12.0463 |
| INF1 | Young developing inflorescences (5mm) | 0.0773544 | 0.104495 | 0.139878 | 0.102803 |
| INF2 | Developing inflorescences (1-1.5 cm) | 1.418 | 0.660566 | 3.14386 | 1.9997 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 88.0876 | 69.5118 | 91.716 | 100.999 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 40.8509 | 36.8328 | 77.2528 | 163.243 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 30.4408 | 38.1111 | 36.982 | 40.6127 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 2.49048 | 2.9956 | 3.20516 | 7.70894 |
CDS Structure of MLOC_55819
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55819.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os02g54180.1 |
+2 |
2e-48 |
161 |
83/131 (63%) |
13102.m06204 protein expressed protein |
| TAIR PP10 |
AT3G14280.1 |
+2 |
1e-11 |
61 |
27/51 (53%) |
unknown protein; Has 51 Blast hits to 51 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4761654-4762286 REVERSE LENGTH=141 |
