MLOC_55795 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains72.198983.360995.430887.2876
LEAShoots from the seedlings (10 cm shoot stage)95.802157.07139.389117.725
INF1Young developing inflorescences (5mm)43.526346.218948.044939.2576
INF2Developing inflorescences (1-1.5 cm)40.825741.3446.727645.742
ROORoots from the seedlings (10 cm shoot stage)37.051167.005965.369682.3919
NODDeveloping tillers at six leaf stage, 3rd internode69.580654.173558.7071193.781
CAR5Developing grain, bracts removed (5 DPA)68.461967.32468.559165.9546
CAR15Developing grain, bracts removed (15 DPA)30.911233.305935.014174.7474



CDS Structure of MLOC_55795






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55795.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355566NoneNoneNoneNone
MLOC_55795.2CUST_3486_PI427708080AvailableAvailablecontig_40271 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g41830.1 +2 0.0 762 365/397 (92%) 13108.m04494 protein sulfite oxidase, putative, expressed
TAIR PP10 AT3G01910.1 +2 0.0 625 289/387 (75%) | Symbols: SOX, AT-SO, AtSO | sulfite oxidase | chr3:314919-317274 REVERSE LENGTH=393