- Predicted Gene MLOC_55791
MLOC_55791 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 20.0212 | 39.122 | 35.2845 | 34.739 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 38.9924 | 33.72 | 31.1936 | 30.9647 |
| INF1 | Young developing inflorescences (5mm) | 50.2472 | 46.0811 | 42.9805 | 39.3691 |
| INF2 | Developing inflorescences (1-1.5 cm) | 51.6151 | 52.689 | 52.0712 | 57.5824 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 20.2672 | 32.0288 | 25.6013 | 38.2006 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 20.5706 | 25.3904 | 27.5933 | 87.6308 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 67.2325 | 61.9339 | 69.1503 | 65.1514 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 31.1428 | 28.7805 | 28.6389 | 67.2077 |
CDS Structure of MLOC_55791
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55791.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os03g06950.1 |
+2 |
0.0 |
1511 |
918/1508 (61%) |
13103.m00766 protein ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed |
| TAIR PP10 |
AT3G47910.2 |
+2 |
0.0 |
886 |
622/1560 (40%) |
Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17674737-17681444 REVERSE LENGTH=1607 |