MLOC_55791 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains20.021239.12235.284534.739
LEAShoots from the seedlings (10 cm shoot stage)38.992433.7231.193630.9647
INF1Young developing inflorescences (5mm)50.247246.081142.980539.3691
INF2Developing inflorescences (1-1.5 cm)51.615152.68952.071257.5824
ROORoots from the seedlings (10 cm shoot stage)20.267232.028825.601338.2006
NODDeveloping tillers at six leaf stage, 3rd internode20.570625.390427.593387.6308
CAR5Developing grain, bracts removed (5 DPA)67.232561.933969.150365.1514
CAR15Developing grain, bracts removed (15 DPA)31.142828.780528.638967.2077



CDS Structure of MLOC_55791






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55791.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371993NoneNoneNoneNone
MLOC_55791.2CUST_18121_PI427708080AvailableAvailablecontig_40159 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g06950.1 +2 0.0 1511 918/1508 (61%) 13103.m00766 protein ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
TAIR PP10 AT3G47910.2 +2 0.0 886 622/1560 (40%) Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17674737-17681444 REVERSE LENGTH=1607