MLOC_55782 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.516115.538214.873915.6732
LEAShoots from the seedlings (10 cm shoot stage)15.366716.667415.549514.1923
INF1Young developing inflorescences (5mm)26.383330.689832.17426.7197
INF2Developing inflorescences (1-1.5 cm)39.52237.332139.75844.9182
ROORoots from the seedlings (10 cm shoot stage)11.091216.265215.69220.4164
NODDeveloping tillers at six leaf stage, 3rd internode15.617317.031319.377761.8816
CAR5Developing grain, bracts removed (5 DPA)18.929320.978921.091321.3448
CAR15Developing grain, bracts removed (15 DPA)9.13318.473648.9167721.9016



CDS Structure of MLOC_55782






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55782.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354420NoneNoneNoneNone
MLOC_55782.1CUST_3483_PI427708080AvailableAvailablecontig_40257 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g04640.1 +1 5e-163 473 250/332 (75%) 13106.m00425 protein bromodomain domain containing protein, expressed
TAIR PP10 AT2G34900.1 +1 9e-86 275 160/355 (45%) | Symbols: GTE01, IMB1, GTE1 | Transcription factor GTE6 | chr2:14723333-14725562 REVERSE LENGTH=386