MLOC_55768 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.844923.782164.637724.27679
LEAShoots from the seedlings (10 cm shoot stage)20.41166.217648.4081410.2399
INF1Young developing inflorescences (5mm)3.283482.301331.742242.27431
INF2Developing inflorescences (1-1.5 cm)1.015041.717013.139022.21637
ROORoots from the seedlings (10 cm shoot stage)19.301918.84228.781525.6264
NODDeveloping tillers at six leaf stage, 3rd internode51.663958.561638.784181.386
CAR5Developing grain, bracts removed (5 DPA)4.090953.730883.847814.19814
CAR15Developing grain, bracts removed (15 DPA)0.05587680.1870110.02694560.288995



CDS Structure of MLOC_55768






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55768.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367452NoneNoneNoneNone
MLOC_55768.1CUST_3478_PI427708080AvailableAvailablecontig_40246 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g04310.1 -2 1e-116 357 232/365 (64%) 13103.m00438 protein BHLH transcription factor, putative, expressed
TAIR PP10 AT5G65640.1 -2 5e-53 187 106/185 (57%) | Symbols: bHLH093 | beta HLH protein 93 | chr5:26237137-26238904 FORWARD LENGTH=351