MLOC_55748 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.369432.962353.223663.21422
LEAShoots from the seedlings (10 cm shoot stage)5.134649.3082711.30437.06752
INF1Young developing inflorescences (5mm)1.535951.894111.949961.55094
INF2Developing inflorescences (1-1.5 cm)2.6032.490232.289942.70792
ROORoots from the seedlings (10 cm shoot stage)4.586623.956673.375964.74872
NODDeveloping tillers at six leaf stage, 3rd internode2.225325.013748.4182316.0977
CAR5Developing grain, bracts removed (5 DPA)4.9824.334484.983554.6257
CAR15Developing grain, bracts removed (15 DPA)2.298482.491622.573215.86619



CDS Structure of MLOC_55748






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55748.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358140NoneNoneNoneNone
MLOC_55748.1CUST_3477_PI427708080AvailableAvailablecontig_40236 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g04840.1 +2 1e-117 355 247/383 (64%) 13108.m00466 protein MYB family transcription factor, putative, expressed
TAIR PP10 AT5G47390.1 +2 4e-57 196 146/377 (39%) myb-like transcription factor family protein | chr5:19227001-19228546 FORWARD LENGTH=365