MLOC_55747 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.906158.937348.7319810.7977
LEAShoots from the seedlings (10 cm shoot stage)20.16365.75235.7326210.2278
INF1Young developing inflorescences (5mm)71.011966.764588.934970.6486
INF2Developing inflorescences (1-1.5 cm)125.732140.261139.596167.066
ROORoots from the seedlings (10 cm shoot stage)3.499426.632757.682379.93926
NODDeveloping tillers at six leaf stage, 3rd internode13.440422.84047.0959983.3695
CAR5Developing grain, bracts removed (5 DPA)77.558777.416572.950485.3556
CAR15Developing grain, bracts removed (15 DPA)4.401812.880296.0677210.5021



CDS Structure of MLOC_55747






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55747.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369691NoneNoneNoneNone
MLOC_55747.1CUST_3476_PI427708080AvailableAvailablecontig_40235 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g38440.3 -2 1e-81 263 159/358 (44%) 13112.m03961 protein XH domain containing protein, expressed
TAIR PP10 AT1G15910.1 -2 1e-22 101 52/132 (39%) XH/XS domain-containing protein | chr1:5465951-5468723 FORWARD LENGTH=634