MLOC_55724 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.92289.229059.862368.86902
LEAShoots from the seedlings (10 cm shoot stage)7.79923.512295.680974.25067
INF1Young developing inflorescences (5mm)0.9349160.624810.3350950.530939
INF2Developing inflorescences (1-1.5 cm)0.1752780.4636170.4165830.382662
ROORoots from the seedlings (10 cm shoot stage)14.518110.788911.492111.2199
NODDeveloping tillers at six leaf stage, 3rd internode45.38143.230545.4324109.787
CAR5Developing grain, bracts removed (5 DPA)3.555883.641863.436873.44078
CAR15Developing grain, bracts removed (15 DPA)0.1846510.2260440.3003370.570724



CDS Structure of MLOC_55724






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55724.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365647NoneNoneNoneNone
MLOC_55724.2CUST_3473_PI427708080AvailableAvailablecontig_40214 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g14030.1 -2 9e-163 479 240/313 (77%) 13103.m01639 protein thaumatin, putative, expressed
TAIR PP10 AT4G38660.2 -2 9e-95 301 163/303 (54%) Pathogenesis-related thaumatin superfamily protein | chr4:18066448-18067792 REVERSE LENGTH=323