MLOC_55720 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.18635.622677.214945.6454
LEAShoots from the seedlings (10 cm shoot stage)5.552551.96663.194852.96497
INF1Young developing inflorescences (5mm)10.524511.834213.36948.82385
INF2Developing inflorescences (1-1.5 cm)8.7972310.0111.941610.0346
ROORoots from the seedlings (10 cm shoot stage)3.625316.171863.901315.99201
NODDeveloping tillers at six leaf stage, 3rd internode8.155865.419376.3618517.7457
CAR5Developing grain, bracts removed (5 DPA)4.681625.245525.385334.5034
CAR15Developing grain, bracts removed (15 DPA)1.827141.681291.927053.64858



CDS Structure of MLOC_55720






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55720.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372615NoneNoneNoneNone
MLOC_55720.2CUST_3472_PI427708080AvailableAvailablecontig_40214 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g14020.1 +3 3e-168 481 250/317 (79%) 13103.m01637 protein AGAP009131-PA, putative, expressed
TAIR PP10 AT4G35987.1 +3 9e-103 311 176/318 (55%) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:17035121-17036823 FORWARD LENGTH=304