MLOC_55703 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains33.403421.693925.414124.3178
LEAShoots from the seedlings (10 cm shoot stage)15.35291.788475.350326.13005
INF1Young developing inflorescences (5mm)9.7256712.81369.00449.26335
INF2Developing inflorescences (1-1.5 cm)6.676395.015173.513145.77309
ROORoots from the seedlings (10 cm shoot stage)172.97249.849109.3978.7087
NODDeveloping tillers at six leaf stage, 3rd internode14.409518.032464.885576.665
CAR5Developing grain, bracts removed (5 DPA)11.358714.518710.608112.0709
CAR15Developing grain, bracts removed (15 DPA)1.721510.976071.431423.4876



CDS Structure of MLOC_55703






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55703.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355906NoneNoneNoneNone
MLOC_55703.1CUST_3469_PI427708080AvailableAvailablecontig_40197 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g18750.1 -1 1e-24 99 53/75 (71%) 13107.m01963 protein LTPL42 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
TAIR PP10 AT5G48485.1 -1 2e-13 67 26/50 (52%) | Symbols: DIR1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr5:19646317-19646625 REVERSE LENGTH=102