MLOC_55702 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.11628.136378.590228.92607
LEAShoots from the seedlings (10 cm shoot stage)7.49316.526596.985925.82663
INF1Young developing inflorescences (5mm)10.640811.65310.70639.71949
INF2Developing inflorescences (1-1.5 cm)9.45459.5742510.933411.2806
ROORoots from the seedlings (10 cm shoot stage)7.525876.816137.937348.48381
NODDeveloping tillers at six leaf stage, 3rd internode3.50943.812444.0678312.0343
CAR5Developing grain, bracts removed (5 DPA)6.522067.247766.876357.17852
CAR15Developing grain, bracts removed (15 DPA)1.702061.697481.121433.86269



CDS Structure of MLOC_55702






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55702.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355365NoneNoneNoneNone
MLOC_55702.1CUST_3468_PI427708080AvailableAvailablecontig_40197 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g17520.1 +2 3e-76 238 125/139 (90%) 13102.m01958 protein cytochrome c-type biogenesis protein ccmH precursor, putative, expressed
TAIR PP10 AT1G15220.2 +2 9e-61 197 96/136 (71%) | Symbols: ATCCMH, CCMH | cytochrome c biogenesis protein family | chr1:5240471-5241117 REVERSE LENGTH=159