MLOC_5569 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.902819.139717.691816.5876
LEAShoots from the seedlings (10 cm shoot stage)13.2564.911595.500146.89618
INF1Young developing inflorescences (5mm)111.576128.624129.08490.8505
INF2Developing inflorescences (1-1.5 cm)113.65128.952106.218117
ROORoots from the seedlings (10 cm shoot stage)6.7454213.924513.712814.5432
NODDeveloping tillers at six leaf stage, 3rd internode0.9542962.66587.889311.4527
CAR5Developing grain, bracts removed (5 DPA)25.07226.32825.911122.4257
CAR15Developing grain, bracts removed (15 DPA)6.87535.611437.8519413.2177



CDS Structure of MLOC_5569






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5569.6
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5569.6CUST_13417_PI427708080AvailableAvailablecontig_136393 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g23110.1 +1 0.0 819 395/448 (88%) 13107.m02269 protein poly synthetase 1, putative, expressed
TAIR PP10 AT2G31320.1 +1 0.0 710 338/448 (75%) | Symbols: PARP2, ATPARP2 | poly(ADP-ribose) polymerase 2 | chr2:13354046-13359578 REVERSE LENGTH=983