- Predicted Gene MLOC_55672
MLOC_55672 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 2.45071 | 7.08269 | 6.81603 | 6.89605 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 9.43807 | 7.00364 | 4.95349 | 7.03754 |
| INF1 | Young developing inflorescences (5mm) | 23.4983 | 23.0109 | 20.9564 | 20.6984 |
| INF2 | Developing inflorescences (1-1.5 cm) | 24.8815 | 28.631 | 23.4394 | 31.535 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 1.63834 | 3.20818 | 2.78314 | 4.54352 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 3.3646 | 4.51799 | 5.63673 | 18.7695 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 12.1395 | 11.6341 | 12.7153 | 13.1488 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 4.0771 | 3.15893 | 3.99571 | 9.11442 |
CDS Structure of MLOC_55672
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55672.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os03g60170.1 |
+3 |
0.0 |
584 |
372/790 (47%) |
13103.m06605 protein expressed protein |
| TAIR PP10 |
AT1G32120.1 |
+3 |
1e-66 |
249 |
168/469 (36%) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). | chr1:11552926-11558608 FORWARD LENGTH=1206 |