MLOC_55672 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.450717.082696.816036.89605
LEAShoots from the seedlings (10 cm shoot stage)9.438077.003644.953497.03754
INF1Young developing inflorescences (5mm)23.498323.010920.956420.6984
INF2Developing inflorescences (1-1.5 cm)24.881528.63123.439431.535
ROORoots from the seedlings (10 cm shoot stage)1.638343.208182.783144.54352
NODDeveloping tillers at six leaf stage, 3rd internode3.36464.517995.6367318.7695
CAR5Developing grain, bracts removed (5 DPA)12.139511.634112.715313.1488
CAR15Developing grain, bracts removed (15 DPA)4.07713.158933.995719.11442



CDS Structure of MLOC_55672






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55672.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55672.1CUST_13413_PI427708080AvailableAvailablecontig_40171 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g60170.1 +3 0.0 584 372/790 (47%) 13103.m06605 protein expressed protein
TAIR PP10 AT1G32120.1 +3 1e-66 249 168/469 (36%) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). | chr1:11552926-11558608 FORWARD LENGTH=1206