MLOC_55669 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.594263.323762.641323.65497
LEAShoots from the seedlings (10 cm shoot stage)1.179820.03941780.2974290.433163
INF1Young developing inflorescences (5mm)11.733510.27128.673529.60491
INF2Developing inflorescences (1-1.5 cm)9.6647312.33919.6088813.6427
ROORoots from the seedlings (10 cm shoot stage)1.306251.712932.133672.31641
NODDeveloping tillers at six leaf stage, 3rd internode0.09579620.1271370.1237360.419665
CAR5Developing grain, bracts removed (5 DPA)1.367161.601881.130791.58642
CAR15Developing grain, bracts removed (15 DPA)0.1243840.01796930.1126870.221614



CDS Structure of MLOC_55669






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55669.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55669.1CUST_13412_PI427708080AvailableAvailablecontig_401675 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g51230.1 -2 2e-166 488 312/441 (71%) 13101.m05340 protein IQ calmodulin-binding motif domain containing protein, expressed
TAIR PP10 AT2G26180.1 -2 2e-63 218 173/371 (47%) | Symbols: IQD6 | IQ-domain 6 | chr2:11143433-11144982 REVERSE LENGTH=416