MLOC_55663 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.496513.28628.7914812.018
LEAShoots from the seedlings (10 cm shoot stage)1.7927927.983282.622433.0627
INF1Young developing inflorescences (5mm)0.08913870.3031390.1118610.158978
INF2Developing inflorescences (1-1.5 cm)0.08778740.1411290.1080930.150241
ROORoots from the seedlings (10 cm shoot stage)23.946733.795127.302336.5322
NODDeveloping tillers at six leaf stage, 3rd internode00.0059434700.0469253
CAR5Developing grain, bracts removed (5 DPA)00.03407300.0429697
CAR15Developing grain, bracts removed (15 DPA)0.0849504000.299192



CDS Structure of MLOC_55663






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55663.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370350NoneNoneNoneNone
MLOC_55663.1CUST_3459_PI427708080AvailableAvailablecontig_40164 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g48030.1 +1 2e-139 407 219/289 (76%) 13107.m05131 protein peroxidase precursor, putative, expressed
TAIR PP10 AT5G05340.1 +1 5e-104 316 170/293 (58%) Peroxidase superfamily protein | chr5:1579142-1580819 REVERSE LENGTH=324