MLOC_55662 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains340.578299.871280.058330.176
LEAShoots from the seedlings (10 cm shoot stage)152.72974.761498.347198.1724
INF1Young developing inflorescences (5mm)454.496420.136424.415401.872
INF2Developing inflorescences (1-1.5 cm)348.105349.106348.586400.559
ROORoots from the seedlings (10 cm shoot stage)363.967287.068296.577397.422
NODDeveloping tillers at six leaf stage, 3rd internode22.670433.044764.5195140.805
CAR5Developing grain, bracts removed (5 DPA)235.029231.635217.978235.588
CAR15Developing grain, bracts removed (15 DPA)86.486780.577474.9946201.885



CDS Structure of MLOC_55662






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55662.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248437.1NoneNoneNoneNone
MLOC_55662.1CUST_3458_PI427708080AvailableAvailablecontig_40162 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g42450.1 -3 7e-149 432 246/305 (81%) 13107.m04437 protein ribosomal protein S2, putative, expressed
TAIR PP10 AT1G72370.2 -3 2e-128 379 197/242 (81%) | Symbols: P40, AP40, RP40, RPSAA | 40s ribosomal protein SA | chr1:27243148-27244842 REVERSE LENGTH=294