MLOC_55659 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.502687.296587.427776.95451
LEAShoots from the seedlings (10 cm shoot stage)4.743784.753894.450583.70365
INF1Young developing inflorescences (5mm)2.981783.737634.193172.94289
INF2Developing inflorescences (1-1.5 cm)3.56824.216954.313934.1853
ROORoots from the seedlings (10 cm shoot stage)4.768227.537386.117487.59615
NODDeveloping tillers at six leaf stage, 3rd internode5.162987.636325.7590820.7618
CAR5Developing grain, bracts removed (5 DPA)10.545311.727911.021410.4452
CAR15Developing grain, bracts removed (15 DPA)2.605582.252562.273275.60291



CDS Structure of MLOC_55659






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55659.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249045.1NoneNoneNoneNone
MLOC_55659.1CUST_18120_PI427708080AvailableAvailablecontig_40159 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g57170.3 -1 0.0 587 281/351 (80%) 13103.m06266 protein cell cycle control protein, putative, expressed
TAIR PP10 AT5G46150.1 -1 2e-144 433 200/325 (62%) LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein | chr5:18708735-18710424 REVERSE LENGTH=343