MLOC_55641 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.597755.583896.239066.93232
LEAShoots from the seedlings (10 cm shoot stage)3.479887.4908211.10126.36162
INF1Young developing inflorescences (5mm)4.573866.3967.759875.52508
INF2Developing inflorescences (1-1.5 cm)8.213210.749.7954211.0532
ROORoots from the seedlings (10 cm shoot stage)11.58037.910039.2564410.5447
NODDeveloping tillers at six leaf stage, 3rd internode1.240832.31211.726026.53635
CAR5Developing grain, bracts removed (5 DPA)1.892472.485762.181472.27335
CAR15Developing grain, bracts removed (15 DPA)0.8046680.7443710.587841.84741



CDS Structure of MLOC_55641






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55641.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55641.3CUST_13408_PI427708080AvailableAvailablecontig_40146 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g28060.1 +1 5e-145 435 251/265 (95%) 13109.m02764 protein MORN repeat domain containing protein, expressed
TAIR PP10 AT1G21920.1 +1 7e-106 333 191/254 (75%) Histone H3 K4-specific methyltransferase SET7/9 family protein | chr1:7704454-7705866 REVERSE LENGTH=417