MLOC_55623 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains19.566346.9541.196736.0503
LEAShoots from the seedlings (10 cm shoot stage)77.1341101.20974.522468.8947
INF1Young developing inflorescences (5mm)51.461556.728455.413242.7221
INF2Developing inflorescences (1-1.5 cm)77.030775.080266.588176.2726
ROORoots from the seedlings (10 cm shoot stage)38.677773.484454.345975.4284
NODDeveloping tillers at six leaf stage, 3rd internode65.521481.155366.8772258.336
CAR5Developing grain, bracts removed (5 DPA)66.934159.336559.113255.8464
CAR15Developing grain, bracts removed (15 DPA)41.535139.772838.144585.5881



CDS Structure of MLOC_55623






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55623.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55623.2CUST_13405_PI427708080AvailableAvailablecontig_40123 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g05500.2 +3 0.0 1492 835/1240 (67%) 13101.m00525 protein zinc finger protein, putative, expressed
TAIR PP10 AT5G02310.1 +3 0.0 853 526/1252 (42%) | Symbols: PRT6 | proteolysis 6 | chr5:474279-482552 FORWARD LENGTH=2006