- Predicted Gene MLOC_55617
MLOC_55617 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_55617_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_55617_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 1.35914 | 1.14837 | 1.39943 | 1.44219 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 1.8885 | 1.4663 | 2.04347 | 1.68467 |
INF1 | Young developing inflorescences (5mm) | 3.56659 | 3.15854 | 3.40695 | 3.09651 |
INF2 | Developing inflorescences (1-1.5 cm) | 2.86744 | 2.63827 | 2.79533 | 3.2216 |
ROO | Roots from the seedlings (10 cm shoot stage) | 1.45797 | 1.68107 | 2.01351 | 2.18039 |
NOD | Developing tillers at six leaf stage, 3rd internode | 1.36171 | 1.65342 | 1.65212 | 5.36832 |
CAR5 | Developing grain, bracts removed (5 DPA) | 2.13058 | 2.77369 | 2.41989 | 2.66218 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.869693 | 0.788832 | 0.557488 | 1.94006 |
CDS Structure of MLOC_55617
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55617.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os11g18830.1 |
-2 |
2e-143 |
436 |
245/354 (69%) |
13111.m01899 protein survival motor neuron containing protein, expressed |
TAIR PP10 |
AT1G54380.1 |
-2 |
1e-50 |
188 |
104/231 (45%) |
spliceosome protein-related | chr1:20298287-20300899 REVERSE LENGTH=515 |