MLOC_55617 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.359141.148371.399431.44219
LEAShoots from the seedlings (10 cm shoot stage)1.88851.46632.043471.68467
INF1Young developing inflorescences (5mm)3.566593.158543.406953.09651
INF2Developing inflorescences (1-1.5 cm)2.867442.638272.795333.2216
ROORoots from the seedlings (10 cm shoot stage)1.457971.681072.013512.18039
NODDeveloping tillers at six leaf stage, 3rd internode1.361711.653421.652125.36832
CAR5Developing grain, bracts removed (5 DPA)2.130582.773692.419892.66218
CAR15Developing grain, bracts removed (15 DPA)0.8696930.7888320.5574881.94006



CDS Structure of MLOC_55617






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55617.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372549NoneNoneNoneNone
MLOC_55617.1CUST_3453_PI427708080AvailableAvailablecontig_40117 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g18830.1 -2 2e-143 436 245/354 (69%) 13111.m01899 protein survival motor neuron containing protein, expressed
TAIR PP10 AT1G54380.1 -2 1e-50 188 104/231 (45%) spliceosome protein-related | chr1:20298287-20300899 REVERSE LENGTH=515