MLOC_55616 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.727811.501213.172312.0177
LEAShoots from the seedlings (10 cm shoot stage)20.983625.504139.157824.1108
INF1Young developing inflorescences (5mm)8.553097.759578.584687.34507
INF2Developing inflorescences (1-1.5 cm)4.903745.425525.856856.19564
ROORoots from the seedlings (10 cm shoot stage)20.493817.858117.741921.8534
NODDeveloping tillers at six leaf stage, 3rd internode83.575576.904948.7681208.453
CAR5Developing grain, bracts removed (5 DPA)10.58039.968689.3725910.3954
CAR15Developing grain, bracts removed (15 DPA)2.547832.266382.741126.09767



CDS Structure of MLOC_55616






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55616.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355286NoneNoneNoneNone
MLOC_55616.1CUST_3452_PI427708080AvailableAvailablecontig_40117 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g56550.1 +3 3e-171 501 254/281 (90%) 13102.m06498 protein ABC transporter, ATP-binding protein, putative, expressed
TAIR PP10 AT1G03905.1 +3 7e-142 425 221/279 (79%) P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:993478-995594 FORWARD LENGTH=290