- Predicted Gene MLOC_55606
MLOC_55606 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_55606_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 8.48399 | 11.0211 | 11.9398 | 11.1254 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 14.8633 | 27.1047 | 25.0893 | 19.9676 |
INF1 | Young developing inflorescences (5mm) | 16.7954 | 16.9053 | 16.557 | 14.6906 |
INF2 | Developing inflorescences (1-1.5 cm) | 19.4107 | 18.0366 | 20.6367 | 21.4649 |
ROO | Roots from the seedlings (10 cm shoot stage) | 8.83379 | 12.6662 | 12.1638 | 15.542 |
NOD | Developing tillers at six leaf stage, 3rd internode | 10.4005 | 8.18797 | 9.88858 | 30.8719 |
CAR5 | Developing grain, bracts removed (5 DPA) | 20.9855 | 20.483 | 18.9707 | 20.4356 |
CAR15 | Developing grain, bracts removed (15 DPA) | 5.43418 | 5.53851 | 5.07521 | 12.7572 |
CDS Structure of MLOC_55606
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55606.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os07g05650.1 |
-3 |
2e-132 |
387 |
198/236 (84%) |
13107.m00526 protein MAGE-8 antigen-related, putative, expressed |
TAIR PP10 |
AT1G34770.1 |
-3 |
6e-84 |
262 |
134/223 (60%) |
CONTAINS InterPro DOMAIN/s: MAGE protein (InterPro:IPR002190); Has 1274 Blast hits to 1260 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 1104; Fungi - 45; Plants - 49; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). | chr1:12746624-12748449 FORWARD LENGTH=237 |