MLOC_55606 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.4839911.021111.939811.1254
LEAShoots from the seedlings (10 cm shoot stage)14.863327.104725.089319.9676
INF1Young developing inflorescences (5mm)16.795416.905316.55714.6906
INF2Developing inflorescences (1-1.5 cm)19.410718.036620.636721.4649
ROORoots from the seedlings (10 cm shoot stage)8.8337912.666212.163815.542
NODDeveloping tillers at six leaf stage, 3rd internode10.40058.187979.8885830.8719
CAR5Developing grain, bracts removed (5 DPA)20.985520.48318.970720.4356
CAR15Developing grain, bracts removed (15 DPA)5.434185.538515.0752112.7572



CDS Structure of MLOC_55606






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55606.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356160NoneNoneNoneNone
MLOC_55606.2CUST_3448_PI427708080AvailableAvailablecontig_40102 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g05650.1 -3 2e-132 387 198/236 (84%) 13107.m00526 protein MAGE-8 antigen-related, putative, expressed
TAIR PP10 AT1G34770.1 -3 6e-84 262 134/223 (60%) CONTAINS InterPro DOMAIN/s: MAGE protein (InterPro:IPR002190); Has 1274 Blast hits to 1260 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 1104; Fungi - 45; Plants - 49; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). | chr1:12746624-12748449 FORWARD LENGTH=237