MLOC_55595 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains896.113706.805667.436832.711
LEAShoots from the seedlings (10 cm shoot stage)441.203221.433261.721279.873
INF1Young developing inflorescences (5mm)1158.431147.821170.971082.67
INF2Developing inflorescences (1-1.5 cm)954.944893.845959.4471124.34
ROORoots from the seedlings (10 cm shoot stage)489.315616.953729.607847.751
NODDeveloping tillers at six leaf stage, 3rd internode68.385778.3554150.53318.385
CAR5Developing grain, bracts removed (5 DPA)428.81437.722409.877472.027
CAR15Developing grain, bracts removed (15 DPA)198.181182.068202.216482.283



CDS Structure of MLOC_55595






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55595.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252620.1NoneNoneNoneNone
MLOC_55595.2CUST_3446_PI427708080AvailableAvailablecontig_40093 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g18570.1 -3 2e-124 358 176/192 (92%) 13103.m02227 protein 40S ribosomal protein S7, putative, expressed
TAIR PP10 AT3G02560.2 -3 1e-101 300 145/190 (76%) Ribosomal protein S7e family protein | chr3:542341-543168 FORWARD LENGTH=191