MLOC_55594 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains82.542885.064985.323680.6107
LEAShoots from the seedlings (10 cm shoot stage)61.263338.856141.165839.6004
INF1Young developing inflorescences (5mm)65.326261.197261.732250.9843
INF2Developing inflorescences (1-1.5 cm)35.417141.834537.101341.2474
ROORoots from the seedlings (10 cm shoot stage)35.025949.494546.885353.8312
NODDeveloping tillers at six leaf stage, 3rd internode19.946613.154814.930346.9549
CAR5Developing grain, bracts removed (5 DPA)99.3283105.344108.6598.7267
CAR15Developing grain, bracts removed (15 DPA)31.286925.469827.382863.0622



CDS Structure of MLOC_55594






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55594.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250427.1NoneNoneNoneNone
MLOC_55594.1CUST_3445_PI427708080AvailableAvailablecontig_40093 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g18590.1 +2 0.0 538 302/369 (82%) 13103.m02229 protein malonyl CoA-acyl carrier protein transacylase, mitochondrial precursor, putative, expressed
TAIR PP10 AT2G30200.1 +2 1e-176 507 267/314 (85%) catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding | chr2:12883162-12885482 REVERSE LENGTH=393