MLOC_55587 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.172121.301281.146491.2268
LEAShoots from the seedlings (10 cm shoot stage)7.6902910.672110.70187.76585
INF1Young developing inflorescences (5mm)1.969272.304072.064611.76178
INF2Developing inflorescences (1-1.5 cm)1.397151.778412.191831.86917
ROORoots from the seedlings (10 cm shoot stage)0.5384910.5209260.5069530.603937
NODDeveloping tillers at six leaf stage, 3rd internode5.152545.480177.6967717.1608
CAR5Developing grain, bracts removed (5 DPA)1.774072.141882.458642.01265
CAR15Developing grain, bracts removed (15 DPA)0.390690.456550.6472991.08664



CDS Structure of MLOC_55587






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55587.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375355NoneNoneNoneNone
MLOC_55587.3CUST_3441_PI427708080AvailableAvailablecontig_40087 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g09370.1 -2 0.0 750 402/470 (86%) 13107.m00945 protein pentatricopeptide, putative, expressed
TAIR PP10 AT1G59720.1 -2 6e-160 491 258/455 (57%) | Symbols: CRR28 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:21939868-21941784 REVERSE LENGTH=638