- Predicted Gene MLOC_55585
MLOC_55585 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 10.3848 | 11.2861 | 11.0425 | 11.0416 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 7.91901 | 6.16276 | 7.4991 | 6.547 |
| INF1 | Young developing inflorescences (5mm) | 19.7359 | 20.8523 | 20.7282 | 16.4694 |
| INF2 | Developing inflorescences (1-1.5 cm) | 16.646 | 18.82 | 19.9612 | 19.3291 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 7.70921 | 8.50795 | 10.8109 | 11.0105 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 1.00338 | 1.30623 | 2.87506 | 5.2718 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 11.1342 | 11.016 | 10.5625 | 10.3849 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 4.27181 | 3.12752 | 3.64832 | 8.01711 |
CDS Structure of MLOC_55585
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55585.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os04g17064.2 |
+2 |
3e-89 |
272 |
133/165 (81%) |
13104.m01547 protein expressed protein |
| TAIR PP10 |
AT5G19300.1 |
+2 |
6e-66 |
217 |
109/167 (65%) |
CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 3649 Blast hits to 1964 proteins in 291 species: Archae - 113; Bacteria - 121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses - 4; Other Eukaryotes - 1703 (source: NCBI BLink). | chr5:6495593-6497987 FORWARD LENGTH=398 |