MLOC_55585 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.384811.286111.042511.0416
LEAShoots from the seedlings (10 cm shoot stage)7.919016.162767.49916.547
INF1Young developing inflorescences (5mm)19.735920.852320.728216.4694
INF2Developing inflorescences (1-1.5 cm)16.64618.8219.961219.3291
ROORoots from the seedlings (10 cm shoot stage)7.709218.5079510.810911.0105
NODDeveloping tillers at six leaf stage, 3rd internode1.003381.306232.875065.2718
CAR5Developing grain, bracts removed (5 DPA)11.134211.01610.562510.3849
CAR15Developing grain, bracts removed (15 DPA)4.271813.127523.648328.01711



CDS Structure of MLOC_55585






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55585.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55585.1CUST_13399_PI427708080AvailableAvailablecontig_40087 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g17064.2 +2 3e-89 272 133/165 (81%) 13104.m01547 protein expressed protein
TAIR PP10 AT5G19300.1 +2 6e-66 217 109/167 (65%) CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 3649 Blast hits to 1964 proteins in 291 species: Archae - 113; Bacteria - 121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses - 4; Other Eukaryotes - 1703 (source: NCBI BLink). | chr5:6495593-6497987 FORWARD LENGTH=398