MLOC_55584 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0.0382699000.0348973
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0.9812252.166970.8491842.44638
NODDeveloping tillers at six leaf stage, 3rd internode00.0087450500.0755936
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_55584






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55584.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370325NoneNoneNoneNone
MLOC_55584.1CUST_3440_PI427708080AvailableAvailablecontig_40086 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g46350.1 +1 0.0 700 341/464 (73%) 13107.m04885 protein OsSCP40 - Putative Serine Carboxypeptidase homologue, expressed
TAIR PP10 AT3G63470.1 +1 5e-166 488 241/453 (53%) | Symbols: scpl40 | serine carboxypeptidase-like 40 | chr3:23438561-23440862 FORWARD LENGTH=502