- Predicted Gene MLOC_55556
MLOC_55556 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 3.31592 | 4.54594 | 4.52888 | 4.40507 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 32.7049 | 15.348 | 10.6599 | 16.0604 |
| INF1 | Young developing inflorescences (5mm) | 0.0420303 | 0.0242182 | 0 | 0.031776 |
| INF2 | Developing inflorescences (1-1.5 cm) | 0.0228705 | 0.0214122 | 0 | 0.0324869 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 6.00643 | 8.40946 | 7.00023 | 9.32445 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 1.56977 | 1.85535 | 0.72215 | 4.67379 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 20.8292 | 27.8879 | 24.7107 | 26.0556 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 6.92684 | 5.23939 | 7.56144 | 16.8929 |
CDS Structure of MLOC_55556
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55556.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os03g63280.1 |
-2 |
5e-154 |
452 |
251/408 (62%) |
13103.m07014 protein regulatory protein, putative, expressed |
| TAIR PP10 |
AT4G19970.1 |
-2 |
2e-76 |
259 |
121/261 (46%) |
CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT5G44820.1); Has 801 Blast hits to 466 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 750; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). | chr4:10818242-10825343 FORWARD LENGTH=715 |
