MLOC_55539 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.159795.917126.237847.01832
LEAShoots from the seedlings (10 cm shoot stage)4.962543.66055.862834.39158
INF1Young developing inflorescences (5mm)4.550326.687747.115835.63551
INF2Developing inflorescences (1-1.5 cm)13.13849.095448.9691811.6297
ROORoots from the seedlings (10 cm shoot stage)11.09587.482117.5002810.8209
NODDeveloping tillers at six leaf stage, 3rd internode11.945916.139427.444554.6897
CAR5Developing grain, bracts removed (5 DPA)7.547847.450238.095137.98248
CAR15Developing grain, bracts removed (15 DPA)3.666792.821922.53357.84471



CDS Structure of MLOC_55539






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55539.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55539.1CUST_7728_PI427708083AvailableAvailablecontig_40051 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g05280.1 -2 3e-19 89 49/70 (70%) 13105.m00547 protein zinc finger family protein, putative, expressed
TAIR PP10None-----