MLOC_55536 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.5099119.751915.829112.7932
LEAShoots from the seedlings (10 cm shoot stage)23.383615.492214.327613.9026
INF1Young developing inflorescences (5mm)40.654736.91733.706726.3939
INF2Developing inflorescences (1-1.5 cm)38.673435.021732.369133.5247
ROORoots from the seedlings (10 cm shoot stage)6.8066315.160511.818513.6231
NODDeveloping tillers at six leaf stage, 3rd internode8.2468610.942311.582734.0791
CAR5Developing grain, bracts removed (5 DPA)23.150420.882422.299417.748
CAR15Developing grain, bracts removed (15 DPA)16.321614.007813.360927.7084



CDS Structure of MLOC_55536






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55536.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55536.1CUST_13391_PI427708080AvailableAvailablecontig_40050 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g74610.1 -2 0.0 2554 1364/1867 (73%) 13101.m08157 protein zinc finger, C3HC4 type domain containing protein, expressed
TAIR PP10 AT5G58410.1 -2 0.0 1269 763/1901 (40%) HEAT/U-box domain-containing protein | chr5:23609663-23617343 FORWARD LENGTH=1873