MLOC_55523 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.970517.040917.543115.0854
LEAShoots from the seedlings (10 cm shoot stage)14.659113.93214.248111.5912
INF1Young developing inflorescences (5mm)18.412821.753223.994315.7585
INF2Developing inflorescences (1-1.5 cm)20.592523.296220.323421.2979
ROORoots from the seedlings (10 cm shoot stage)12.541617.676617.852619.1884
NODDeveloping tillers at six leaf stage, 3rd internode18.238819.149815.927259.844
CAR5Developing grain, bracts removed (5 DPA)20.128120.144921.35617.7465
CAR15Developing grain, bracts removed (15 DPA)6.122526.401066.4671412.5549



CDS Structure of MLOC_55523






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55523.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362863NoneNoneNoneNone
MLOC_55523.1CUST_3425_PI427708080AvailableAvailablecontig_40040 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g37410.1 -3 0.0 587 325/457 (71%) 13110.m03391 protein TBC domain containing protein, expressed
TAIR PP10 AT5G41940.1 -3 3e-130 407 232/415 (56%) Ypt/Rab-GAP domain of gyp1p superfamily protein | chr5:16782039-16785451 FORWARD LENGTH=549