MLOC_55522 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.330322.073371.72011.90469
LEAShoots from the seedlings (10 cm shoot stage)3.685165.749235.795414.25855
INF1Young developing inflorescences (5mm)0.3866010.5071560.463790.403353
INF2Developing inflorescences (1-1.5 cm)0.284060.2547390.3724940.344522
ROORoots from the seedlings (10 cm shoot stage)5.366695.372674.654366.53686
NODDeveloping tillers at six leaf stage, 3rd internode4.92374.595586.6278614.5943
CAR5Developing grain, bracts removed (5 DPA)3.498654.584943.515114.15118
CAR15Developing grain, bracts removed (15 DPA)3.490723.820422.846958.76039



CDS Structure of MLOC_55522






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55522.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357945NoneNoneNoneNone
MLOC_55522.1CUST_3424_PI427708080AvailableAvailablecontig_40040 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g37430.1 -2 0.0 679 355/443 (80%) 13110.m03394 protein expressed protein
TAIR PP10 AT5G41950.1 -2 0.0 544 276/383 (72%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:16785825-16789360 FORWARD LENGTH=565