MLOC_55495 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.03983.268096.01046.2414
LEAShoots from the seedlings (10 cm shoot stage)1.8983500.2665770.951745
INF1Young developing inflorescences (5mm)10.760111.654917.044913.9444
INF2Developing inflorescences (1-1.5 cm)8.644659.257587.393511.4357
ROORoots from the seedlings (10 cm shoot stage)5.189921.685934.700433.27852
NODDeveloping tillers at six leaf stage, 3rd internode00.05661910.01980180.210265
CAR5Developing grain, bracts removed (5 DPA)6.375675.498448.622687.80693
CAR15Developing grain, bracts removed (15 DPA)0.18935700.2742950.435131



CDS Structure of MLOC_55495






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55495.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55495.1CUST_13384_PI427708080AvailableAvailablecontig_40020 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g17100.1 -1 2e-51 168 103/112 (92%) 13103.m02043 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT5G02560.1 -1 4e-47 155 93/112 (83%) | Symbols: HTA12 | histone H2A 12 | chr5:575437-576456 FORWARD LENGTH=153