- Predicted Gene MLOC_55470
MLOC_55470 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 1.58433 | 2.25512 | 1.86815 | 1.99136 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 0.287706 | 0.0568896 | 0.0642441 | 0.123187 |
| INF1 | Young developing inflorescences (5mm) | 1.14163 | 1.34109 | 1.32962 | 1.05749 |
| INF2 | Developing inflorescences (1-1.5 cm) | 1.04128 | 1.07186 | 1.0696 | 1.13574 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 0.870671 | 1.03643 | 1.33835 | 1.26527 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 0 | 0.0136789 | 0.0343425 | 0.0833176 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 0.665789 | 0.643629 | 0.611963 | 0.613185 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 0.266395 | 0.370839 | 0.450261 | 0.763673 |
CDS Structure of MLOC_55470
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55470.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os04g35610.1 |
+2 |
0.0 |
1095 |
575/685 (84%) |
13104.m03478 protein pentatricopeptide, putative |
| TAIR PP10 |
AT2G13600.1 |
+2 |
0.0 |
755 |
357/621 (57%) |
Pentatricopeptide repeat (PPR) superfamily protein | chr2:5671493-5673586 FORWARD LENGTH=697 |