MLOC_55470 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.584332.255121.868151.99136
LEAShoots from the seedlings (10 cm shoot stage)0.2877060.05688960.06424410.123187
INF1Young developing inflorescences (5mm)1.141631.341091.329621.05749
INF2Developing inflorescences (1-1.5 cm)1.041281.071861.06961.13574
ROORoots from the seedlings (10 cm shoot stage)0.8706711.036431.338351.26527
NODDeveloping tillers at six leaf stage, 3rd internode00.01367890.03434250.0833176
CAR5Developing grain, bracts removed (5 DPA)0.6657890.6436290.6119630.613185
CAR15Developing grain, bracts removed (15 DPA)0.2663950.3708390.4502610.763673



CDS Structure of MLOC_55470






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55470.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368066NoneNoneNoneNone
MLOC_55470.1CUST_3417_PI427708080AvailableAvailablecontig_39997 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g35610.1 +2 0.0 1095 575/685 (84%) 13104.m03478 protein pentatricopeptide, putative
TAIR PP10 AT2G13600.1 +2 0.0 755 357/621 (57%) Pentatricopeptide repeat (PPR) superfamily protein | chr2:5671493-5673586 FORWARD LENGTH=697