MLOC_55469 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4172640.7299730.7015990.607778
LEAShoots from the seedlings (10 cm shoot stage)0.5161910.5419960.3108120.378474
INF1Young developing inflorescences (5mm)1.952221.986881.451141.47952
INF2Developing inflorescences (1-1.5 cm)1.252741.362841.357161.36839
ROORoots from the seedlings (10 cm shoot stage)0.8283040.8734460.4789310.963261
NODDeveloping tillers at six leaf stage, 3rd internode00.0252490.06205190.154066
CAR5Developing grain, bracts removed (5 DPA)0.8878441.140720.9997750.926909
CAR15Developing grain, bracts removed (15 DPA)0.3133390.2921730.1610640.601813



CDS Structure of MLOC_55469






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55469.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55469.1CUST_13378_PI427708080AvailableAvailablecontig_39997 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g35650.1 +3 0.0 1039 542/689 (79%) 13104.m03482 protein pentatricopeptide, putative, expressed
TAIR PP10 AT3G26540.1 +3 8e-166 506 273/605 (45%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:9744542-9746644 REVERSE LENGTH=700