MLOC_55468 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains21.152627.156328.226327.4919
LEAShoots from the seedlings (10 cm shoot stage)14.98976.672756.012268.29056
INF1Young developing inflorescences (5mm)15.213716.775414.68313.8571
INF2Developing inflorescences (1-1.5 cm)10.981914.911712.775715.1477
ROORoots from the seedlings (10 cm shoot stage)32.816930.43126.427539.6397
NODDeveloping tillers at six leaf stage, 3rd internode5.208464.705982.4415515.7316
CAR5Developing grain, bracts removed (5 DPA)19.229719.786519.421620.1537
CAR15Developing grain, bracts removed (15 DPA)2.926621.430372.582955.5571



CDS Structure of MLOC_55468






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55468.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371047NoneNoneNoneNone
MLOC_55468.2CUST_3416_PI427708080AvailableAvailablecontig_39996 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g53680.1 +3 0.0 975 492/557 (88%) 13101.m05624 protein 6-phosphofructokinase, putative, expressed
TAIR PP10 AT5G56630.1 +3 0.0 698 340/447 (76%) | Symbols: PFK7 | phosphofructokinase 7 | chr5:22924311-22926728 FORWARD LENGTH=485