MLOC_55460 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.92370.9821360.8811731.071
LEAShoots from the seedlings (10 cm shoot stage)1.123190.6385951.400080.790273
INF1Young developing inflorescences (5mm)0.2485990.1989130.2050690.188598
INF2Developing inflorescences (1-1.5 cm)0.3987870.1282330.3533290.321888
ROORoots from the seedlings (10 cm shoot stage)0.7725150.2157230.2835570.302827
NODDeveloping tillers at six leaf stage, 3rd internode0.5516760.4127570.6557341.09153
CAR5Developing grain, bracts removed (5 DPA)11.616122.52415.760516.2215
CAR15Developing grain, bracts removed (15 DPA)200.444127.598171.866415.414



CDS Structure of MLOC_55460






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55460.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354204NoneNoneNoneNone
MLOC_55460.1CUST_3415_PI427708080AvailableAvailablecontig_39986 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g46200.1 -1 2e-53 176 122/159 (77%) 13104.m04645 protein oleosin, putative, expressed
TAIR PP10 AT4G25140.1 -1 3e-30 115 67/110 (61%) | Symbols: OLEO1, OLE1 | oleosin 1 | chr4:12900498-12901259 FORWARD LENGTH=173