MLOC_55451 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.0743357000.0670647
LEAShoots from the seedlings (10 cm shoot stage)0.122917000.130397
INF1Young developing inflorescences (5mm)0.20419400.340710.21027
INF2Developing inflorescences (1-1.5 cm)0.2769280.05099160.8336770.290209
ROORoots from the seedlings (10 cm shoot stage)00.14286500.372838
NODDeveloping tillers at six leaf stage, 3rd internode0.06343460.08886490.02032640.240429
CAR5Developing grain, bracts removed (5 DPA)00.060314400.0631086
CAR15Developing grain, bracts removed (15 DPA)0.15188500.3327480.458017



CDS Structure of MLOC_55451






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55451.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55451.2CUST_7721_PI427708083AvailableAvailablecontig_39979 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g08550.1 +2 2e-53 192 88/182 (48%) 13111.m00902 protein retrotransposon protein, putative, unclassified
TAIR PP10 AT4G20520.1 +2 5e-12 66 31/83 (37%) RNA binding;RNA-directed DNA polymerases | chr4:11045912-11047716 FORWARD LENGTH=376