MLOC_55428 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0.43103200.6387220.448089
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_55428






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55428.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373412NoneNoneNoneNone
MLOC_55428.1CUST_3414_PI427708080AvailableAvailablecontig_39959 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g27190.1 +3 5e-80 251 160/302 (53%) 13101.m02828 protein C2 domain containing protein, putative, expressed
TAIR PP10 AT1G09070.1 +3 1e-17 82 69/211 (33%) | Symbols: SRC2, (AT)SRC2 | soybean gene regulated by cold-2 | chr1:2927767-2928741 FORWARD LENGTH=324